Teaching
Courses taught at the University of Fukui. Assignments change from year to year. For team-taught and laboratory courses, only the sessions I teach are listed.
AY2026
The World of Biology (バイオの世界; general education; sessions 9–16)
- Introduction to mathematical models of biological phenomena
- Mathematics of biochemical reactions: basics
- Mathematics of biochemical reactions: enzyme kinetics
- Mathematics of cell-fate decisions: gene-expression models
- Mathematics of cell-fate decisions: differentiation and stability
- Single-cell analysis and cellular diversity
- Data science of disease
Bioengineering (生物工学; undergraduate; sessions 1–8)
- Bioengineering and mathematical approaches
- Mathematical models of cell proliferation
- Mathematical analysis and simulation of enzyme reactions
- Mathematical models of gene-expression regulation
- Metabolic-network analysis and applications to bioproduction
- Analysis and application of omics data
- Introduction to bioinformatics
- Review and midterm exam
Materials Science and Biotechnology Laboratory I (物質・生命化学実験I; undergraduate; experiments 1, 11, and 13)
- Regression analysis of experimental data by least squares
- Brownian motion
- Adsorption equilibrium (adsorption from solution onto a solid)
Basic Chemistry Laboratory (基礎化学実験; undergraduate; experiment 1)
- Analysis of biological sequence data
Information PBL (情報PBL; graduate; full course)
- Fundamentals (preprocessing, dimensionality reduction, clustering, ML basics)
- Problem setting (research question, dataset selection, analysis plan)
- Implementation and analysis (running pipelines, interim feedback)
- Presentation (final presentation and report)
Introduction to Life Sciences (ライフサイエンス概論; graduate, team-taught; session 15)
- Understanding living systems through model-driven and data-driven approaches
Advanced Topics in Integrated Life Sciences (生命科学複合特論; graduate, team-taught; one session)
- What is life?
At another university: Advanced Simulation (シミュレーション特論), Kochi University.